HL_5ZEB_021

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAUAG

Length

7 nucleotides

Bulged bases

5ZEB|1|A|U|739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEB_021 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.1459

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5ZEB|1|A|U|735
5ZEB|1|A|G|736
5ZEB|1|A|A|737
5ZEB|1|A|A|738
5ZEB|1|A|U|739
5ZEB|1|A|A|740
5ZEB|1|A|G|741

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L33 1

Chain 6

50S ribosomal protein L35

Chain M

50S ribosomal protein L15