HL_5ZEB_040

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAAAUC

Length

7 nucleotides

Bulged bases

5ZEB|1|A|U|1713, 5ZEB|1|A|U|1717

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEB_040 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1087

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5ZEB|1|A|G|1712
5ZEB|1|A|U|1713
5ZEB|1|A|A|1714
5ZEB|1|A|A|1715
5ZEB|1|A|A|1716
5ZEB|1|A|U|1717
5ZEB|1|A|C|1718

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2