HL_5ZEB_060

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGACAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEB_060 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.2009

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5ZEB|1|A|C|2579
5ZEB|1|A|G|2580
5ZEB|1|A|G|2581
5ZEB|1|A|A|2582
5ZEB|1|A|C|2583
5ZEB|1|A|A|2584
5ZEB|1|A|U|2585
5ZEB|1|A|G|2586

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L35

Chain M

50S ribosomal protein L15

Chain X

50S ribosomal protein L27