HL_5ZEB_107
3D structure
- PDB id
- 5ZEB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. Smegmatis P/P state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 5ZEB|1|v|G|19, 5ZEB|1|v|G|20, 5ZEB|1|v|U|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5ZEB_107 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1177
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
5ZEB|1|v|C|13
5ZEB|1|v|A|14
5ZEB|1|v|G|15
5ZEB|1|v|C|16
5ZEB|1|v|C|17
5ZEB|1|v|U|18
5ZEB|1|v|G|19
5ZEB|1|v|G|20
5ZEB|1|v|U|21
5ZEB|1|v|A|22
5ZEB|1|v|G|23
Current chains
- Chain v
- P-tRNAfMet
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
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