HL_5ZEB_109
3D structure
- PDB id
- 5ZEB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. Smegmatis P/P state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5ZEB_109 not in the Motif Atlas
- Homologous match to HL_4WJ4_003
- Geometric discrepancy: 0.1396
- The information below is about HL_4WJ4_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
5ZEB|1|v|G|54
5ZEB|1|v|U|55
5ZEB|1|v|U|56
5ZEB|1|v|C|57
5ZEB|1|v|A|58
5ZEB|1|v|A|59
5ZEB|1|v|A|60
5ZEB|1|v|U|61
5ZEB|1|v|C|62
Current chains
- Chain v
- P-tRNAfMet
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
- Chain N
- 50S ribosomal protein L16
Coloring options: