HL_5ZEB_110

3D structure

PDB id

5ZEB (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. Smegmatis P/P state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

5ZEB|1|A|C|2369

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEB_110 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.296

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5ZEB|1|A|A|2365
5ZEB|1|A|C|2366
5ZEB|1|A|G|2367
5ZEB|1|A|C|2368
5ZEB|1|A|C|2369
5ZEB|1|A|A|2370
5ZEB|1|A|G|2371
5ZEB|1|A|U|2372

Current chains

Chain A

23S rRNA

Nearby chains

Chain k

30S ribosomal protein S11