HL_5ZEP_021

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAUAG

Length

7 nucleotides

Bulged bases

5ZEP|1|A|U|739

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEP_021 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.146

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5ZEP|1|A|U|735
5ZEP|1|A|G|736
5ZEP|1|A|A|737
5ZEP|1|A|A|738
5ZEP|1|A|U|739
5ZEP|1|A|A|740
5ZEP|1|A|G|741

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L33 1

Chain 3

50S ribosomal protein L35

Chain M

50S ribosomal protein L15