HL_5ZEP_025

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

5ZEP|1|A|A|896, 5ZEP|1|A|G|899

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEP_025 not in the Motif Atlas

Homologous match to HL_5J7L_156

Geometric discrepancy: 0.1289

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

5ZEP|1|A|U|894
5ZEP|1|A|G|895
5ZEP|1|A|A|896
5ZEP|1|A|A|897
5ZEP|1|A|A|898
5ZEP|1|A|G|899
5ZEP|1|A|G|900

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2