HL_5ZEP_029

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEP_029 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.1081

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5ZEP|1|A|G|1096
5ZEP|1|A|A|1097
5ZEP|1|A|A|1098
5ZEP|1|A|A|1099
5ZEP|1|A|C|1100
5ZEP|1|A|A|1101
5ZEP|1|A|G|1102
5ZEP|1|A|C|1103

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

Uncharacterized protein

Chain v

50S ribosomal protein L30