HL_5ZEP_037

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

5ZEP|1|A|U|1511, 5ZEP|1|A|U|1512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEP_037 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1701

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5ZEP|1|A|G|1504
5ZEP|1|A|U|1505
5ZEP|1|A|U|1506
5ZEP|1|A|G|1507
5ZEP|1|A|A|1508
5ZEP|1|A|U|1509
5ZEP|1|A|A|1510
5ZEP|1|A|U|1511
5ZEP|1|A|U|1512
5ZEP|1|A|C|1513

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23