HL_5ZEP_039

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCAGUGGUAAUA

Length

12 nucleotides

Bulged bases

5ZEP|1|A|G|1674, 5ZEP|1|A|U|1675, 5ZEP|1|A|U|1681

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEP_039 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.563

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5ZEP|1|A|U|1671
5ZEP|1|A|C|1672
5ZEP|1|A|A|1673
5ZEP|1|A|G|1674
5ZEP|1|A|U|1675
5ZEP|1|A|G|1676
5ZEP|1|A|G|1677
5ZEP|1|A|U|1678
5ZEP|1|A|A|1679
5ZEP|1|A|A|1680
5ZEP|1|A|U|1681
5ZEP|1|A|A|1682

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17