HL_5ZEP_040

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAAAUC

Length

7 nucleotides

Bulged bases

5ZEP|1|A|U|1713, 5ZEP|1|A|U|1717

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEP_040 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1087

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5ZEP|1|A|G|1712
5ZEP|1|A|U|1713
5ZEP|1|A|A|1714
5ZEP|1|A|A|1715
5ZEP|1|A|A|1716
5ZEP|1|A|U|1717
5ZEP|1|A|C|1718

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2