HL_5ZEP_067

3D structure

PDB id

5ZEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis hibernating state 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEP_067 not in the Motif Atlas

Homologous match to HL_7RQB_064

Geometric discrepancy: 0.1102

The information below is about HL_7RQB_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5ZEP|1|A|C|2882
5ZEP|1|A|G|2883
5ZEP|1|A|A|2884
5ZEP|1|A|G|2885
5ZEP|1|A|A|2886
5ZEP|1|A|G|2887

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6