HL_5ZET_003

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

5ZET|1|A|A|122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZET_003 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.105

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5ZET|1|A|G|120
5ZET|1|A|G|121
5ZET|1|A|A|122
5ZET|1|A|A|123
5ZET|1|A|A|124
5ZET|1|A|C|125

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L34

Chain U

50S ribosomal protein L23