HL_5ZET_020

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZET_020 not in the Motif Atlas

Homologous match to HL_7A0S_020

Geometric discrepancy: 0.0999

The information below is about HL_7A0S_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5ZET|1|A|C|723
5ZET|1|A|G|724
5ZET|1|A|A|725
5ZET|1|A|A|726
5ZET|1|A|A|727
5ZET|1|A|G|728

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L35

Chain M

50S ribosomal protein L15