HL_5ZET_035

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCAGUC

Length

7 nucleotides

Bulged bases

5ZET|1|A|C|1440, 5ZET|1|A|U|1444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZET_035 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.1444

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

5ZET|1|A|G|1439
5ZET|1|A|C|1440
5ZET|1|A|C|1441
5ZET|1|A|A|1442
5ZET|1|A|G|1443
5ZET|1|A|U|1444
5ZET|1|A|C|1445

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22