HL_5ZET_037

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

5ZET|1|A|U|1511, 5ZET|1|A|U|1512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZET_037 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1701

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5ZET|1|A|G|1504
5ZET|1|A|U|1505
5ZET|1|A|U|1506
5ZET|1|A|G|1507
5ZET|1|A|A|1508
5ZET|1|A|U|1509
5ZET|1|A|A|1510
5ZET|1|A|U|1511
5ZET|1|A|U|1512
5ZET|1|A|C|1513

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23