HL_5ZET_059

3D structure

PDB id

5ZET (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAAGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZET_059 not in the Motif Atlas

Homologous match to HL_4WF9_052

Geometric discrepancy: 0.1375

The information below is about HL_4WF9_052

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

5ZET|1|A|U|2548
5ZET|1|A|G|2549
5ZET|1|A|U|2550
5ZET|1|A|A|2551
5ZET|1|A|A|2552
5ZET|1|A|G|2553
5ZET|1|A|U|2554
5ZET|1|A|G|2555

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L33 1

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27