HL_5ZEU_035

3D structure

PDB id

5ZEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis P/P state 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEU_035 not in the Motif Atlas

Homologous match to HL_4WJ4_003

Geometric discrepancy: 0.1396

The information below is about HL_4WJ4_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

5ZEU|1|v|G|54
5ZEU|1|v|U|55
5ZEU|1|v|U|56
5ZEU|1|v|C|57
5ZEU|1|v|A|58
5ZEU|1|v|A|59
5ZEU|1|v|A|60
5ZEU|1|v|U|61
5ZEU|1|v|C|62

Current chains

Chain v

P-tRNAfMet

Nearby chains