HL_5ZEY_005

3D structure

PDB id

5ZEY (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis Trans-translation state 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

12.5 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZEY_005 not in the Motif Atlas

Homologous match to HL_4LCK_003

Geometric discrepancy: 0.1325

The information below is about HL_4LCK_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5ZEY|1|B|G|54
5ZEY|1|B|U|55
5ZEY|1|B|U|56
5ZEY|1|B|C|57
5ZEY|1|B|A|58
5ZEY|1|B|A|59
5ZEY|1|B|A|60
5ZEY|1|B|U|61
5ZEY|1|B|C|62

Current chains

Chain B

A-tRNAfMet

Nearby chains