HL_5ZQ8_002

3D structure

PDB id

5ZQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of spRlmCD with U747 stemloop RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.18 Å

Loop

Sequence

CGU(MUM)GAAAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: MUM

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_17440.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5ZQ8|1|D|C|744
5ZQ8|1|D|G|745
5ZQ8|1|D|U|746
5ZQ8|1|D|MUM|747
5ZQ8|1|D|G|748
5ZQ8|1|D|A|749
5ZQ8|1|D|A|750
5ZQ8|1|D|A|751
5ZQ8|1|D|A|752
5ZQ8|1|D|G|753

Current chains

Chain D

RNA (5'-R(*CP*CP*GP*UP*(MUM)P*GP*AP*AP*AP*AP*GP*G)-3')

Nearby chains

Chain A

Uncharacterized RNA methyltransferase SP_1029

Chain B

Uncharacterized RNA methyltransferase SP_1029

Chain C

RNA (5'-R(*CP*CP*GP*UP*(MUM)P*GP*AP*AP*AP*AP*GP*G)-3')