HL_5ZTM_001

3D structure

PDB id

5ZTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of MLE dsRBDs in complex with roX2 (R2H1)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUGAUAAUCGU

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ZTM_001 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3004

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5ZTM|1|C|A|133
5ZTM|1|C|U|134
5ZTM|1|C|G|141
5ZTM|1|C|A|142
5ZTM|1|C|U|143
5ZTM|1|C|A|144
5ZTM|1|C|A|145
5ZTM|1|C|U|146
5ZTM|1|C|C|147
5ZTM|1|C|G|148
5ZTM|1|C|U|149

Current chains

Chain C

non-coding mRNA sequence roX2

Nearby chains

Chain A

Dosage compensation regulator

Chain B

Dosage compensation regulator