HL_6AAX_002

3D structure

PDB id

6AAX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of TFB1M and h45 with SAM in homo sapiens

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

UGGAAA

Length

6 nucleotides

Bulged bases

6AAX|1|D|G|934, 6AAX|1|D|G|935, 6AAX|1|D|A|937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AAX_002 not in the Motif Atlas

Geometric match to HL_4ZLD_001

Geometric discrepancy: 0.1762

The information below is about HL_4ZLD_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

6AAX|1|D|U|933
6AAX|1|D|G|934
6AAX|1|D|G|935
6AAX|1|D|A|936
6AAX|1|D|A|937
6AAX|1|D|A|938

Current chains

Chain D

RNA (28-mer)

Nearby chains

Chain C

Dimethyladenosine transferase 1, mitochondrial