HL_6AH3_009

3D structure

PDB id

6AH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Ribonuclease P with pre-tRNA substrate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

CAGUUGGGAG

Length

10 nucleotides

Bulged bases

6AH3|1|T|U|16, 6AH3|1|T|G|18, 6AH3|1|T|G|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AH3_009 not in the Motif Atlas

Homologous match to HL_7UQ6_001

Geometric discrepancy: 0.1627

The information below is about HL_7UQ6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

6AH3|1|T|C|13
6AH3|1|T|A|14
6AH3|1|T|G|15
6AH3|1|T|U|16
6AH3|1|T|U|17
6AH3|1|T|G|18
6AH3|1|T|G|19
6AH3|1|T|G|20
6AH3|1|T|A|21
6AH3|1|T|G|22

Current chains

Chain T

pre-tRNA

Nearby chains

Chain A

Nuclear RNase P

Chain D

RNases MRP/P 32.9 kDa subunit

Chain J

Ribonuclease P/MRP protein subunit RPP1

Chain K

Ribonuclease P protein subunit RPR2