HL_6AWB_008

3D structure

PDB id

6AWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

6AWB|1|A|C|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AWB_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.4372

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6AWB|1|A|A|320
6AWB|1|A|A|321
6AWB|1|A|C|322
6AWB|1|A|U|323
6AWB|1|A|G|324
6AWB|1|A|A|325
6AWB|1|A|G|326
6AWB|1|A|A|327
6AWB|1|A|C|328
6AWB|1|A|A|329
6AWB|1|A|C|330
6AWB|1|A|G|331
6AWB|1|A|G|332
6AWB|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S16

Chain W

30S ribosomal protein S20