HL_6BHJ_002

3D structure

PDB id

6BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of HIV-1 Reverse Transcriptase Bound to a 38-mer Hairpin Template-Primer RNA-DNA Aptamer

Experimental method

X-RAY DIFFRACTION

Resolution

2.81 Å

Loop

Sequence

C(DU)(DU)(DU)G

Length

5 nucleotides

Bulged bases

6BHJ|1|F|DU|16, 6BHJ|1|F|DU|17, 6BHJ|1|F|DU|18

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6BHJ|1|F|C|15
6BHJ|1|F|DU|16
6BHJ|1|F|DU|17
6BHJ|1|F|DU|18
6BHJ|1|F|DG|19

Current chains

Chain F

38-MER RNA-DNA Aptamer

Nearby chains

Chain C

HIV-1 REVERSE TRANSCRIPTASE P66 subunit

Chain D

HIV-1 REVERSE TRANSCRIPTASE P51 subunit