HL_6BJX_007

3D structure

PDB id

6BJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

AUCUU

Length

5 nucleotides

Bulged bases

6BJX|1|A|U|236, 6BJX|1|A|C|237, 6BJX|1|A|U|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BJX_007 not in the Motif Atlas

Geometric match to HL_1GID_008

Geometric discrepancy: 0.3306

The information below is about HL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50621.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6BJX|1|A|A|235
6BJX|1|A|U|236
6BJX|1|A|C|237
6BJX|1|A|U|238
6BJX|1|A|U|239

Current chains

Chain A

Group I self-splicing intron P4-P6 domain

Nearby chains