HL_6BOK_044

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

6BOK|1|B|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_044 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0833

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6BOK|1|B|G|382
6BOK|1|B|U|383
6BOK|1|B|U|384
6BOK|1|B|C|385
6BOK|1|B|G|386
6BOK|1|B|U|387
6BOK|1|B|G|388
6BOK|1|B|G|389
6BOK|1|B|A|390
6BOK|1|B|G|391
6BOK|1|B|C|392

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain Y

50S ribosomal protein L28