HL_6BOK_045

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

6BOK|1|B|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_045 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.097

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

6BOK|1|B|G|410
6BOK|1|B|G|411
6BOK|1|B|A|412
6BOK|1|B|C|413
6BOK|1|B|C|414
6BOK|1|B|A|415
6BOK|1|B|C|416
6BOK|1|B|C|417

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain Y

50S ribosomal protein L28