HL_6BOK_048

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_048 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2885

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6BOK|1|B|C|544
6BOK|1|B|G|545
6BOK|1|B|C|546
6BOK|1|B|A|547
6BOK|1|B|A|548
6BOK|1|B|G|549

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L13

Chain S

50S ribosomal protein L21