HL_6BOK_052

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

6BOK|1|B|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_052 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.2643

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6BOK|1|B|C|641
6BOK|1|B|G|642
6BOK|1|B|A|643
6BOK|1|B|A|644
6BOK|1|B|C|645
6BOK|1|B|A|646
6BOK|1|B|G|647

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain DA

50S ribosomal protein L33

Chain FA

50S ribosomal protein L35

Chain M

50S ribosomal protein L15