HL_6BOK_080

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6BOK|1|B|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_080 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.0686

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

6BOK|1|B|G|1949
6BOK|1|B|G|1950
6BOK|1|B|U|1951
6BOK|1|B|A|1952
6BOK|1|B|A|1953
6BOK|1|B|G|1954
6BOK|1|B|U|1955
6BOK|1|B|U|1956
6BOK|1|B|C|1957

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain GD

Peptide chain release factor 1

Chain L

50S ribosomal protein L14