HL_6BOK_103

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GCAGCCUGGUAGC

Length

13 nucleotides

Bulged bases

6BOK|1|D|G|18, 6BOK|1|D|G|19, 6BOK|1|D|U|20, 6BOK|1|D|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_103 not in the Motif Atlas

Homologous match to HL_5IB8_207

Geometric discrepancy: 0.3458

The information below is about HL_5IB8_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6BOK|1|D|G|12
6BOK|1|D|C|13
6BOK|1|D|A|14
6BOK|1|D|G|15
6BOK|1|D|C|16
6BOK|1|D|C|17
6BOK|1|D|U|17|||A
6BOK|1|D|G|18
6BOK|1|D|G|19
6BOK|1|D|U|20
6BOK|1|D|A|21
6BOK|1|D|G|22
6BOK|1|D|C|23

Current chains

Chain D

16S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain SA

30S ribosomal protein S11