HL_6BOK_109

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CCUUGG

Length

6 nucleotides

Bulged bases

6BOK|1|DB|U|189, 6BOK|1|DB|G|190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_109 not in the Motif Atlas

Geometric match to HL_4LFB_004

Geometric discrepancy: 0.1048

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

6BOK|1|DB|C|186|||G
6BOK|1|DB|C|187
6BOK|1|DB|U|188
6BOK|1|DB|U|189
6BOK|1|DB|G|190
6BOK|1|DB|G|191|||A

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S17