HL_6BOK_112

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_112 not in the Motif Atlas

Geometric match to HL_4LFB_007

Geometric discrepancy: 0.1059

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6BOK|1|DB|U|296
6BOK|1|DB|G|297
6BOK|1|DB|A|298
6BOK|1|DB|G|299
6BOK|1|DB|A|300
6BOK|1|DB|G|301

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S17

Chain OC

30S ribosomal protein S4

Chain PC

30S ribosomal protein S5

Chain WC

30S ribosomal protein S12