HL_6BOK_118

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GCAGCC(7MG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_118 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2542

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6BOK|1|DB|G|521
6BOK|1|DB|C|522
6BOK|1|DB|A|523
6BOK|1|DB|G|524
6BOK|1|DB|C|525
6BOK|1|DB|C|526
6BOK|1|DB|7MG|527
6BOK|1|DB|C|528

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain KC

mRNA

Chain WC

30S ribosomal protein S12