HL_6BOK_119

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_119 not in the Motif Atlas

Geometric match to HL_4LFB_014

Geometric discrepancy: 0.0854

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_92337.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

6BOK|1|DB|G|617
6BOK|1|DB|C|618
6BOK|1|DB|U|619
6BOK|1|DB|C|620
6BOK|1|DB|A|621
6BOK|1|DB|A|622
6BOK|1|DB|C|623

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S16

Chain OC

30S ribosomal protein S4