HL_6BOK_128

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_128 not in the Motif Atlas

Geometric match to HL_4V9F_065

Geometric discrepancy: 0.0676

The information below is about HL_4V9F_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6BOK|1|DB|C|1076
6BOK|1|DB|G|1077
6BOK|1|DB|U|1078
6BOK|1|DB|G|1079
6BOK|1|DB|A|1080
6BOK|1|DB|G|1081

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain MC

30S ribosomal protein S2

Chain PC

30S ribosomal protein S5

Chain SC

30S ribosomal protein S8