HL_6BOK_132

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_132 not in the Motif Atlas

Geometric match to HL_5TBW_033

Geometric discrepancy: 0.1788

The information below is about HL_5TBW_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6BOK|1|DB|G|1265
6BOK|1|DB|G|1266
6BOK|1|DB|C|1267
6BOK|1|DB|A|1268
6BOK|1|DB|A|1269
6BOK|1|DB|C|1270

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S19

Chain FD

30S ribosomal protein Thx

Chain XC

30S ribosomal protein S13