HL_6BOK_142

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6BOK|1|EB|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_142 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.0642

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6BOK|1|EB|G|194
6BOK|1|EB|A|195
6BOK|1|EB|A|196
6BOK|1|EB|A|197
6BOK|1|EB|C|198
6BOK|1|EB|A|199
6BOK|1|EB|U|200
6BOK|1|EB|C|201

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L28

Chain PB

50S ribosomal protein L15