HL_6BOK_166

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GGGAUGACC

Length

9 nucleotides

Bulged bases

6BOK|1|EB|A|1174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_166 not in the Motif Atlas

Geometric match to HL_4LFB_004

Geometric discrepancy: 0.3891

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

6BOK|1|EB|G|1170
6BOK|1|EB|G|1171
6BOK|1|EB|G|1173
6BOK|1|EB|A|1174
6BOK|1|EB|U|1175
6BOK|1|EB|G|1176
6BOK|1|EB|A|1177
6BOK|1|EB|C|1178
6BOK|1|EB|C|1179

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain P

50S ribosomal protein L18