HL_6BOK_171

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6BOK|1|EB|U|1396, 6BOK|1|EB|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_171 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0884

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6BOK|1|EB|G|1389
6BOK|1|EB|U|1390
6BOK|1|EB|U|1391
6BOK|1|EB|A|1392
6BOK|1|EB|A|1393
6BOK|1|EB|U|1394
6BOK|1|EB|A|1395
6BOK|1|EB|U|1396
6BOK|1|EB|U|1397
6BOK|1|EB|C|1398

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain XB

50S ribosomal protein L23