3D structure

PDB id
6BOK (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.55 Å

Loop

Sequence
CCCGUACGGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6BOK_174 not in the Motif Atlas
Geometric match to HL_1FIR_001
Geometric discrepancy: 0.3555
The information below is about HL_1FIR_001
Detailed Annotation
tRNA D-loop
Broad Annotation
No text annotation
Motif group
HL_20811.1
Basepair signature
cWW-cWS-F
Number of instances in this motif group
18

Unit IDs

6BOK|1|EB|C|1531
6BOK|1|EB|C|1532
6BOK|1|EB|C|1533
6BOK|1|EB|G|1534
6BOK|1|EB|U|1535
6BOK|1|EB|A|1536
6BOK|1|EB|C|1537
6BOK|1|EB|G|1538
6BOK|1|EB|G|1539
6BOK|1|EB|G|1540

Current chains

Chain EB
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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