HL_6BOK_184
3D structure
- PDB id
- 6BOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- CG(PSU)AAC(5MU)A(PSU)AA(4OC)G
- Length
- 13 nucleotides
- Bulged bases
- 6BOK|1|EB|A|1913, 6BOK|1|EB|C|1914, 6BOK|1|EB|A|1916
- QA status
- Modified nucleotides: PSU, 5MU, 4OC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6BOK_184 not in the Motif Atlas
- Homologous match to HL_7RQB_048
- Geometric discrepancy: 0.1323
- The information below is about HL_7RQB_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6BOK|1|EB|C|1909
6BOK|1|EB|G|1910
6BOK|1|EB|PSU|1911
6BOK|1|EB|A|1912
6BOK|1|EB|A|1913
6BOK|1|EB|C|1914
6BOK|1|EB|5MU|1915
6BOK|1|EB|A|1916
6BOK|1|EB|PSU|1917
6BOK|1|EB|A|1918
6BOK|1|EB|A|1919
6BOK|1|EB|4OC|1920
6BOK|1|EB|G|1921
Current chains
- Chain EB
- 23S ribosomal RNA
Nearby chains
- Chain DB
- Small subunit ribosomal RNA; SSU rRNA
- Chain HD
- Peptide chain release factor 1
- Chain LC
- Small subunit ribosomal RNA fragment; SSU rRNA fragment
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