HL_6BOK_192

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_192 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.0786

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

6BOK|1|EB|C|2324
6BOK|1|EB|G|2325
6BOK|1|EB|C|2326
6BOK|1|EB|A|2327
6BOK|1|EB|A|2328
6BOK|1|EB|G|2329
6BOK|1|EB|G|2330
6BOK|1|EB|G|2331

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L27

Chain KB

50S ribosomal protein L5

Chain LC

Small subunit ribosomal RNA fragment; SSU rRNA fragment