HL_6BOK_195

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

6BOK|1|EB|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_195 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.122

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

6BOK|1|EB|C|2404
6BOK|1|EB|G|2405
6BOK|1|EB|U|2406
6BOK|1|EB|G|2407
6BOK|1|EB|U|2408
6BOK|1|EB|G|2409
6BOK|1|EB|G|2410
6BOK|1|EB|A|2411
6BOK|1|EB|A|2412
6BOK|1|EB|G|2413

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L28

Chain PB

50S ribosomal protein L15