HL_6BOK_196

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_196 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.1454

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6BOK|1|EB|C|2471
6BOK|1|EB|G|2472
6BOK|1|EB|U|2473
6BOK|1|EB|C|2474
6BOK|1|EB|C|2475
6BOK|1|EB|A|2476
6BOK|1|EB|C|2477
6BOK|1|EB|A|2478
6BOK|1|EB|G|2479

Current chains

Chain EB

23S ribosomal RNA

Nearby chains

Chain JC

50S ribosomal protein L36

Chain LB

50S ribosomal protein L6