HL_6BOK_206

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CAUUCCG

Length

7 nucleotides

Bulged bases

6BOK|1|FB|U|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOK_206 not in the Motif Atlas

Geometric match to HL_7RQB_070

Geometric discrepancy: 0.1137

The information below is about HL_7RQB_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87939.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6BOK|1|FB|C|38
6BOK|1|FB|A|39
6BOK|1|FB|U|40
6BOK|1|FB|U|41
6BOK|1|FB|C|42
6BOK|1|FB|C|43
6BOK|1|FB|G|44

Current chains

Chain FB

5S ribosomal RNA

Nearby chains

Chain EB

Large subunit ribosomal RNA; LSU rRNA

Chain EC

50S ribosomal protein L31

Chain KB

50S ribosomal protein L5

Chain SB

50S ribosomal protein L18