HL_6BOK_214
3D structure
- PDB id
- 6BOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 6BOK|1|LC|C|16, 6BOK|1|LC|G|18, 6BOK|1|LC|G|19, 6BOK|1|LC|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6BOK_214 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1445
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
6BOK|1|LC|C|13
6BOK|1|LC|A|14
6BOK|1|LC|G|15
6BOK|1|LC|C|16
6BOK|1|LC|C|17
6BOK|1|LC|U|17|||A
6BOK|1|LC|G|18
6BOK|1|LC|G|19
6BOK|1|LC|U|20
6BOK|1|LC|A|21
6BOK|1|LC|G|22
Current chains
- Chain LC
- 16S ribosomal RNA
Nearby chains
- Chain EB
- Large subunit ribosomal RNA; LSU rRNA
- Chain KB
- 50S ribosomal protein L5
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