HL_6BOK_216
3D structure
- PDB id
- 6BOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- G(5MU)(PSU)CAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6BOK_216 not in the Motif Atlas
- Homologous match to HL_6CFJ_108
- Geometric discrepancy: 0.1011
- The information below is about HL_6CFJ_108
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.7
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
6BOK|1|LC|G|53
6BOK|1|LC|5MU|54
6BOK|1|LC|PSU|55
6BOK|1|LC|C|56
6BOK|1|LC|A|57
6BOK|1|LC|A|58
6BOK|1|LC|A|59
6BOK|1|LC|U|60
6BOK|1|LC|C|61
Current chains
- Chain LC
- 16S ribosomal RNA
Nearby chains
- Chain EB
- Large subunit ribosomal RNA; LSU rRNA
- Chain KB
- 50S ribosomal protein L5
- Chain QB
- 50S ribosomal protein L16
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